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    Home » Dinner

    Spaghetti Squash Pizza Casserole

    • DF
    • EF
    • GF
    September 18, 2024, Updated September 18, 2024 by Lauren Less 7 Comments

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    If you're craving pizza and pasta but looking for a more wholesome option, this spaghetti squash pizza casserole will be your new go-to! This dish is low-carb and the perfect comfort food to satisfy your cravings! It is made with simple ingredients like ground beef, marinara sauce and your favorite pizza toppings! This spaghetti squash casserole is also protein-focused! It is easy to prepare and packed with so much flavor. This dish is easy to customize and this dish can be made gluten free and dairy free. It is kid-friendly and perfect for a weeknight dinner or meal prep. If you love casseroles/bakes, you will also love my dairy free chicken casserole, buffalo chicken bake and my gluten free pasta bake!

    Jump to Recipe Print Recipe

    What Is Spaghetti Squash?

    Spaghetti squash is a type of winter squash that gets its name from the long, spaghetti-like strands of flesh that form when it's cooked. It's a popular low-carb alternative to traditional pasta, as it's high in fiber and nutrients.

    Why You'll Love This Meal

    It's packed with so much flavor!

    This spaghetti squash pizza casserole is super unique!

    This dish is easily customizable.

    It can be made gluten free and dairy free!

    This meal is perfect for lunch, dinner or meal prep.

    It is kid-friendly!

    It is a more wholesome version of comfort food.

    Equipment Needed

    All you need to make this spaghetti squash pizza casserole is a baking sheet, cutting board, knife, pan and baking dish.

    Ingredients Needed

    Spaghetti Squash: I used a medium spaghetti squash for this recipe.

    Oil: I used avocado oil in this recipe to oil the pan and baking dish.

    Onion: I love adding onion into my ground beef. It adds delicious flavor and onions have so many health benefits.

    Meat: I used ground beef in this recipe, but feel free to use any ground meat you like!

    Spices: I used oregano, garlic, red pepper flakes and salt to add flavor to this recipe! My favorite is Redmond's Real Salt garlic salt because it is high-quality and made with zero fillers. If you use my discount code LESSWITHLAUR you can get 15% off Redmond's website.

    Marinara Sauce: I used spicy marinara in this casserole because Brett loves spice!

    Cheese: I used my cashew cheese sauce recipe in this casserole to make it dairy free. Feel free to use store bought cheese though!

    Toppings: I used pepperoni to top this casserole, but feel free to use any toppings you love!

    Step-By-Step Instructions

    Step 1: Gather your ingredients and preheat oven to 400°F.

    Step 2: Cut spaghetti squash in half. My hack for this is microwaving the spaghetti squash for 2-3 minutes first to make it easier to cut! Remove the seeds, drizzle with oil and place face down on a baking sheet.

    Step 3: Bake for 30 minutes, or until tender. This will depend on the size of your spaghetti squash.

    Step 4: Chop onions and add them to a pan on medium heat with ground beef, garlic, oregano and salt.

    Step 5: Once beef is browned, pour in marinara sauce and cook for 5 more minutes.

    Step 6: Squeeze spaghetti squash to drain the excess liquid. Add to a greased baking dish.

    Step 7: Layer meat sauce, cheese and toppings on top. Top with red pepper flakes and additional spices, if desired!

    Step 8: Bake for 25-30 minutes at 350°F. Enjoy!

    Storage

    Store this casserole in the refrigerator in an airtight container for 3-4 days. This recipe makes a great lunch or dinner meal prep!

    Variations

    Meat: I used ground beef in this recipe, but feel free to use ground turkey or ground chicken instead!

    Cheese: I used my cashew cheese recipe to make this dairy free, but feel free to use any cheese you love!

    Toppings: I used pepperoni as a topping, but you can use any toppings you love. Try out bacon, sausage, mushrooms, peppers, olives, spinach, broccoli, pineapple and/or artichoke hearts.

    Vegetables: I used onion, but you can add any vegetables into the marinara sauce that you love. Try adding peppers, mushrooms and more!

    Spices: I used garlic, salt, oregano and red pepper flakes

    Sauce: I used spicy marinara sauce, but feel free to use regular marinara! You can also use a pesto or a white sauce!

    How to Serve

    I like to serve this spaghetti squash pizza bake with a side salad or soup! It also makes a delicious meal on its own!

    Recipe FAQ

    What is the best way to cut a spaghetti squash?

    I like to microwave the spaghetti squash for 3-4 minutes to make it easier to slice. Make sure to pierce the spaghetti squash with a fork several times before microwaving!

    What do I do if the recipe comes out soupy?

    To ensure this doesn't happen, make sure to squeeze out the liquid from the spaghetti squash before placing it in a baking dish.

    What can I serve this dish with?

    I like to serve this spaghetti squash pizza casserole with a side salad or soup!

    Is this recipe gluten free?

    Yes, this recipe is gluten free!

    Is this recipe dairy free?

    This recipe is dairy free if you use a dairy free sauce and cheese!

    Can I make this recipe ahead of time?

    Yes! This recipe can be made ahead of time and stored in the refrigerator. It is also great for meal prep!

    What does spaghetti squash taste like?

    Spaghetti squash has a mild, slightly sweet flavor.

    Is it easy to shred the spaghetti squash?

    Yes, spaghetti squash is very easy to shred!

    Can I make this recipe vegan?

    Yes, this recipe can be made vegan by removing the meat and making sure to use dairy free cheese!

    Related Recipes

    Be sure to try these delicious dinner ideas next:

    Gluten Free French Onion Soup with Chicken

    Greek Lemon Chicken and Potatoes

    Paleo Tuna Cakes

    Egg Roll in a Bowl

    Mason Jar Taco Salad

    If you make this spaghetti squash pizza casserole and love it, I would really appreciate a 5 star review! I also love seeing your creations so please tag me on Instagram or TikTok.

    Want to Save This Recipe?

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    Savory pepperoni and melted cheese baked casserole dish.
    Print Recipe
    5 from 4 votes

    Spaghetti Squash Pizza Casserole

    If you're craving pizza and pasta but looking for a more wholesome option, this spaghetti squash pizza casserole will be your new go-to! This dish is low-carb and the perfect comfort food to satisfy your cravings! It is made with simple ingredients like ground beef, marinara sauce and your favorite pizza toppings!
    Prep Time10 minutes mins
    Cook Time1 hour hr
    Course: Dinner, dinners, Lunch, Lunch Ideas
    Servings: 4
    Author: Lauren Less

    Equipment

    • 1 baking sheet
    • 1 cutting board
    • 1 knife
    • 1 pan
    • 1 baking dish

    Ingredients

    • 1 spaghetti squash
    • 2 tbsp avocado oil
    • 1 sweet onion
    • 1 lb ground beef
    • 1 tsp oregano
    • 1 tsp garlic powder
    • 1 tsp red pepper flakes
    • dash salt
    • 1 jar marinara
    • 1 1/2 cups cheese (or my cashew cheese recipe)
    • 1/2 cup pepperoni
    InstacartGet Recipe Ingredients

    Instructions

    • Gather your ingredients and preheat oven to 400°F.
    • Cut spaghetti squash in half. My hack for this is microwaving the spaghetti squash for 2-3 minutes first to make it easier to cut! Remove the seeds, drizzle with oil and place face down on a baking sheet.
    • Bake for 30 minutes, or until tender. This will depend on the size of your spaghetti squash.
    • Chop onions and add them to a pan on medium heat with ground beef, garlic, oregano and salt.
    • Once beef is browned, pour in marinara sauce and cook for 5 more minutes.
    • Squeeze spaghetti squash to drain the excess liquid. Add to a greased baking dish.
    • Layer meat sauce, cheese and toppings on top. Top with red pepper flakes and additional spices, if desired!
    • Bake for 25-30 minutes at 350°F. Enjoy!

    Notes

    PRO TIP: Make sure to squeeze excess liquid out of spaghetti squash before adding it to the baking dish! 

    More Dinner

    • beef bolognese in a pot
      One Pot Gluten-Free Beef Bolognese (Nightshade-Free)
    • shepherd's pie layered in a jar with mashed potatoes, ground beef and veggies
      Shepherd's Pie Mason Jar Meal Prep (Gluten-Free & Dairy-Free)
    • Winter Salad with Pomegranate
    • Easy Chicken Satay Skewers with Homemade Sauce

    Reader Interactions

    Comments

    1. Lauren

      September 18, 2024 at 8:03 pm

      Reply
    2. Anonymous

      September 21, 2024 at 1:14 am

      5 stars

      Reply
    3. Danielle Wilson

      October 27, 2024 at 6:17 pm

      5 stars
      So good! Next time I’ll definitely add veggies for more flavor.

      Reply
      • Lauren

        February 05, 2025 at 10:49 pm

        Good idea!

        Reply
    4. Shelby

      September 03, 2025 at 3:07 am

      5 stars
      Delicious. Would actually also recommend a lasagna style and layer the squash, meat sauce and cheese.

      Reply
      • Lauren

        September 13, 2025 at 2:32 am

        OO love that

        Reply
    5. Rachael Turnquist

      September 15, 2025 at 9:55 pm

      5 stars
      This turned out so yummy!! I added mushrooms and will add peppers and olives next time.
      I also made the cashew cheese and didn’t tell my family it wasn’t real cheese. They had no idea!! It was that good! Great recipes. Thank you so much!

      Reply

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    Hi, I’m Lauren! I lived most of my life eating anything my heart desired until I was suddenly diagnosed with several food allergies around age 25. I currently manage wheat, dairy, egg, sesame, maple, soy, buckwheat and peanut allergies.

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